ZFIN ID: ZDB-GENE-041014-332
Gene Name: LIM homeobox transcription factor 1, alpha
Gene Symbol: lmx1a
Sequence Ontology ID : SO:0000704

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Previous Name: si:ch211-260g14.3

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Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 1 from Burzynski et al., 2013
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  brain, cranial ganglion, diencephalon, otic vesicle (all 6) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1653 Point Mutation Unknown Splice Site ENU
sa9422 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32304 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37086 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lmx1a HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lmx1a-001 (1) 1374
    lmx1a-002 (1) 534
    lmx1a-003 (1) 615
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lmx1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    lmx1aContained in: [BAC] CH211-260G14 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001025498 (1) 1374bp
    Genomic GenBank:BX296562 (1) 129328bp
    Select Tool
    Polypeptide UniProtKB:Q5RI65 (1) 366aa
    Sequence Clusters UniGene:108111 (1)
    Sequence Information (all 15)
    OTHER lmx1a GENE PAGES
  • Gene:558036 (1)
  • VEGA:OTTDARG00000006141 (1)
  • Ensembl(GRCz10):ENSDARG00000020354 (1)
  • ORTHOLOGY for lmx1a (Chr: 20)
    CITATIONS (16)