ZFIN ID: ZDB-GENE-041014-320
Gene Name: chemokine (C-C motif) ligand 38, duplicate 1
Gene Symbol: ccl38.1    Nomenclature History

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Previous Names: CCL38aa (1), CCL-chr20g (1), dr-chr20-CCL7-40.0%-DN (1), Dr20_WGA1544_1_1446828 (1), si:dkey-217m5.3

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to localize to the extracellular space.
Genome Resources: Alliance (1),  Gene:794050 (1),  Ensembl(GRCz11):ENSDARG00000041919 (1)
GENE EXPRESSION
All Expression Data: Fig. 5 from Nomiyama et al., 2008
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa43506 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44948 Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ccl38.1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ccl38.1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chemotaxis (more)
    Cellular Component extracellular region (more)
    Molecular Function chemokine activity (more)
    GO Terms (all 18)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR000827 CC chemokine, conserved site
    Domain IPR001811 Chemokine interleukin-8-like domain
    Homologous_superfamily IPR036048 Chemokine interleukin-8-like superfamily
    Family IPR039809 Chemokine beta/gamma/delta
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ccl38.1-201 (1)    Ensembl 670
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ccl38.1 No data available
    MARKER RELATIONSHIPS
    ccl38.1 Contained in: [BAC] DKEY-217M5 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082896 (1) 369 bp
    Genomic GenBank:AL845306 (1) 186675 bp
    Select Tool
    Polypeptide UniProtKB:A9ZPE8 (1) 106 aa
    Sequence Information (all 9)
    ORTHOLOGY for ccl38.1 ( Chr: 20 )
    CITATIONS (23)