ZFIN ID: ZDB-GENE-041014-272
Gene Name: TATA box binding protein (TBP)-associated factor, RNA polymerase I, A
Gene Symbol: taf1a
Sequence Ontology ID : SO:0000704

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Previous Names: si:ch211-180b22.3, zgc:136232

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in heart contraction; predicted to localize to the RNA polymerase I transcription factor complex; orthologous to human TAF1A (TATA-box binding protein associated factor, RNA polymerase I  ...
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
xu076 Small Deletion Exon 1 Frameshift, Premature Stop TALEN
Targeting reagents:
PHENOTYPE
Data: Fig. 3 from Long et al., 2017
Observed in:
DISEASE ASSOCIATED WITH taf1a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH taf1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process heart contraction (more)
Cellular Component RNA polymerase I transcription factor complex (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR016629 (1)
  • InterPro:IPR039495 (1)
  • Pfam:PF14929 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA taf1a-001 (1) 1635
    taf1a-002 (1) 1934
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM taf1a No data available
    MARKER RELATIONSHIPS
    taf1aContained in: [BAC] CH211-180B22 (1) (order this)
    taf1aEncodes: [cDNA] MGC:136232 (order this), MGC:158113 (1) (order this), MGC:192425 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045274 (1) 1713bp
    Genomic GenBank:AL935035 (1) 151114bp
    Select Tool
    Polypeptide UniProtKB:A2RUW3 (1) 448aa
    Sequence Clusters UniGene:48479 (1)
    Sequence Information (all 24)
    OTHER taf1a GENE PAGES
  • Alliance (1)
  • Gene:567105 (1)
  • VEGA:OTTDARG00000006576 (1)
  • Ensembl(GRCz11):ENSDARG00000052471 (2)
  • ORTHOLOGY for taf1a (Chr: 20)
    CITATIONS (18)