ZFIN ID: ZDB-GENE-041014-190
Gene Name: D4, zinc and double PHD fingers, family 3
Gene Symbol: dpf3
Sequence Ontology ID : SO:0000704

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Previous Names: fj43h12, si:ch211-268e23.1, wu:fj43h12

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have histone acetyltransferase activity and histone binding activity; involved in cardiac muscle tissue morphogenesis and regulation of transcription, DNA-templated; predicted to  ...
GENE EXPRESSION
All Expression Data: Fig. 3 from Lange et al., 2008
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la021511Tg Transgenic Insertion Unknown Unknown DNA
sa8788 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11991 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 4 from Lange et al., 2008
    Observed in:
    DISEASE ASSOCIATED WITH dpf3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH dpf3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac muscle tissue morphogenesis (more)
    Cellular Component SWI/SNF complex (more)
    Molecular Function histone binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001965 (1)
  • InterPro:IPR011011 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR019787 (1)
  • InterPro:IPR025750 (1)
  • InterPro:IPR038047 (1)
  • PROSITE:PS01359 (1)
  • PROSITE:PS50016 (1)
  • Pfam:PF00628 (1)
  • Pfam:PF14051 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA dpf3-001 (1) 1289
    ncRNA dpf3-002 (1) 638
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM dpf3 No data available
    MARKER RELATIONSHIPS
    dpf3Contained in: [BAC] CH211-268E23 (1) (order this)
    dpf3Encodes: [EST] fj43h12
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001111169 (1) 1321bp
    Genomic GenBank:BX255881 (1) 163427bp
    Select Tool
    Polypeptide UniProtKB:A9LMC0 (1) 391aa
    Sequence Clusters UniGene:81131 (1)
    Sequence Information (all 20)
    OTHER dpf3 GENE PAGES
  • Alliance (1)
  • Gene:562738 (1)
  • VEGA:OTTDARG00000006148 (1)
  • Ensembl(GRCz11):ENSDARG00000025309 (2)
  • ORTHOLOGY for dpf3 (Chr: 20)
    CITATIONS (22)