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General Information
ZIRC
ZFIN ID: ZDB-GENE-041014-167
Gene Name: chemokine (C-C motif) ligand 38, duplicate 5
Gene Symbol: ccl38a.5    Nomenclature History

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Previous Names: ccl2 (1), CCL38ae (1), CCL-chr20c (1), Dr20_WGA1544_1_382837 (1), si:dkeyp-59a8.2

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to localize to the extracellular space. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human CCL7 (C-C motif chemokine ligand 7).
Genome Resources: Alliance (1),  Gene:563208 (1),  Ensembl(GRCz11):ENSDARG00000041835 (1)
GENE EXPRESSION
All Expression Data: Fig. 2 from Cambier et al., 2017
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-ccl38a.5 N/A 1
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ccl38a.5 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ccl38a.5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process chemotaxis (more)
Cellular Component extracellular region (more)
Molecular Function chemokine activity (more)
GO Terms (all 18)
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ccl38a.5-201 (1)    Ensembl 532
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ccl38a.5 No data available
MARKER RELATIONSHIPS
ccl38a.5 Contained in: [BAC] DKEYP-59A8 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001030173 (1) 532 bp
Genomic GenBank:BX957287 (1) 154419 bp
Select Tool
Polypeptide UniProtKB:Q5TYQ0 (1) 103 aa
Sequence Clusters UniGene:84529 (1)
Sequence Information (all 6)
ORTHOLOGY for ccl38a.5 ( Chr: 20 )
CITATIONS (26)