ZFIN ID: ZDB-GENE-041014-147
Gene Name: si:ch211-278j3.3
Gene Symbol: si:ch211-278j3.3    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to localize to the cytoplasm and ubiquitin ligase complex. Orthologous to human RNF19B (ring finger protein 19B).
Genome Resources: Alliance (1),  Gene:568165 (1),  Ensembl(GRCz11):ENSDARG00000020284 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la013800Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-278j3.3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-278j3.3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein ubiquitination (more)
    Cellular Component integral component of membrane (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001841 Zinc finger, RING-type
    Domain IPR002867 IBR domain
    Homologous_superfamily IPR013083 Zinc finger, RING/FYVE/PHD-type
    Family IPR031127 E3 ubiquitin ligase RBR family
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-278j3.3-201 (1)    Ensembl 3867
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-278j3.3 No data available
    MARKER RELATIONSHIPS
    si:ch211-278j3.3 Contained in: [BAC] CH211-278J3 (1), DKEY-71H2 (1) (order this)
    si:ch211-278j3.3 Encodes: [cDNA] MGC:194573 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_691478 (1) 3694 bp
    Genomic GenBank:BX842692 (1) 190113 bp
    Select Tool
    Polypeptide UniProtKB:F1R3T6 (1) 611 aa
    Sequence Information (all 16)
    ORTHOLOGY for si:ch211-278j3.3 ( Chr: 20 )
    CITATIONS (20)