ZFIN ID: ZDB-GENE-041010-82
Gene Name: secretagogin, EF-hand calcium binding protein
Gene Symbol: scgn    Nomenclature History

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Previous Name: zgc:100843

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Involved in brain development. Predicted to localize to several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).
Genome Resources: Alliance (1),  Gene:573010 (1),  Ensembl(GRCz11):ENSDARG00000058732 (1)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa25001 Point Mutation Unknown Premature Stop ENU
sa36035 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-scgn
    1
    CRISPR2-scgn
    1
    MO1-scgn N/A 2
    MO2-scgn N/A 1
    DISEASE ASSOCIATED WITH scgn HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scgn VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process brain development (more)
    Cellular Component cytoplasm (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scgn-201 (1)    Ensembl 1615
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scgn No data available
    MARKER RELATIONSHIPS
    scgn Contained in: [BAC] CH211-160K2 (1)
    scgn Encodes: [cDNA] MGC:100843 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001005776 (1) 1645 nt
    Genomic GenBank:AL935025 (1) 147313 nt
    Select Tool
    Polypeptide UniProtKB:Q5XJX1 (1) 272 aa
    Sequence Information (all 11)
    ORTHOLOGY for scgn ( Chr: 16 )
    CITATIONS (18)