ZFIN ID: ZDB-GENE-041010-140
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Gene Name: claudin 5b
Gene Symbol: cldn5b
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:103419

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have structural molecule activity; predicted to localize to the bicellular tight junction, integral component of membrane, and plasma membrane; orthologous to human CLDN5 (claudin 5).
GENE EXPRESSION
All Expression Data: 12 figures from 6 publications
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2004 [MGC:103419]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH cldn5b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH cldn5b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process biological_process (more)
Cellular Component bicellular tight junction (more)
Molecular Function structural molecule activity (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004031 (1)
  • InterPro:IPR006187 (1)
  • InterPro:IPR017974 (1)
    		•
  • PROSITE:PS01346 (1)
    		•
  • Pfam:PF00822 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cldn5b-201 (1) 1647
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM cldn5b
    MARKER RELATIONSHIPS
    cldn5bContained in: [BAC] CH211-122A17 (1) (order this)
    cldn5bEncodes: [cDNA] MGC:103419 (1) (order this), MGC:192214 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001006044 (1) 1621bp
    Select Tool
    Genomic GenBank:CR384089 (1) 92630bp
    Select Tool
    Polypeptide UniProtKB:F1R5J2 (1) 220aa
    Select Tool
    Sequence Clusters UniGene:87001 (1)
    Sequence Information (all 14)
    OTHER cldn5b GENE PAGES
  • Alliance (1)
  • Gene:450023 (1)
  • VEGA:OTTDARG00000019223 (1)
  • Ensembl(GRCz11):ENSDARG00000014059 (2)
    • ORTHOLOGY for cldn5b (Chr: 10)
    CITATIONS (38)