ZFIN ID: ZDB-GENE-041010-135
Gene Name: SAM domain, SH3 domain and nuclear localisation signals 1b
Gene Symbol: samsn1b    Nomenclature History

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Previous Name: zgc:103427 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Is expressed in epiphysis and retinal photoreceptor layer. Orthologous to human SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1).
Genome Resources: Alliance (1),  Gene:450018 (1),  Ensembl(GRCz11):ENSDARG00000078647 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 7 figures (13 images) from Thisse et al., 2004 [MGC:103427]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15266 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21788 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21789 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27661 Point Mutation Unknown Splice Site ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH samsn1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH samsn1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001452 SH3 domain
    Domain IPR001660 Sterile alpha motif domain
    Homologous_superfamily IPR013761 Sterile alpha motif/pointed domain superfamily
    Family IPR021090 SAM/SH3 domain-containing
    Homologous_superfamily IPR036028 SH3-like domain superfamily
    Domain IPR037623 SAMSN1, SAM domain
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA samsn1b-201 (1)    Ensembl 1498
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM samsn1b No data available
    MARKER RELATIONSHIPS
    samsn1b Contained in: [BAC] CH73-85O12 (1), CH211-30E10 (1)
    samsn1b Encodes: [cDNA] MGC:103427 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001006039 (1) 1487 bp
    Genomic GenBank:BX000451 (1) 153155 bp
    Select Tool
    Polypeptide UniProtKB:F1RBX4 (1) 354 aa
    Sequence Information (all 17)
    ORTHOLOGY for samsn1b ( Chr: 10 )
    CITATIONS (16)