ZFIN ID: ZDB-GENE-041008-246
Gene Name: ring finger protein 4
Gene Symbol: rnf4    Nomenclature History

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Previous Names: im:7142942, im:7144630, si:ch211-159i8.3

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have transcription factor binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human RNF4 (ring finger protein 4).
Genome Resources: Alliance (1),  Gene:557319 (1),  Ensembl(GRCz11):ENSDARG00000090993 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7142942]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7144630]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
rj108 Small Deletion Exon 3 Premature Stop TALEN
sa35660 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-rnf4 N/A 1
    TALEN1-rnf4 1
    DISEASE ASSOCIATED WITH rnf4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rnf4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process positive regulation of transcription by RNA polymerase II (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rnf4-201 (1)    Ensembl 1279
    rnf4-202 (1)    Ensembl 796
    rnf4-203 (1)    Ensembl 1347
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rnf4 No data available
    MARKER RELATIONSHIPS
    rnf4 Contained in: [BAC] CH211-159I8 (1)
    rnf4 Encodes: [EST] IMAGE:7142942 (1), IMAGE:7144630 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_678336 (1) 1349 nt
    Genomic GenBank:BX004830 (1) 201070 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IUS5 (1) 184 aa
    Sequence Information (all 15)
    ORTHOLOGY for rnf4 ( Chr: 14 )
    CITATIONS (18)