ZFIN ID: ZDB-GENE-041008-101
Gene Name: regulatory factor X, 1b (influences HLA class II expression)
Gene Symbol: rfx1b    Nomenclature History

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Previous Name: im:7137369 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human RFX1 (regulatory factor X1).
Genome Resources: Alliance (1),  Gene:555183 (1),  Ensembl(GRCz11):ENSDARG00000075904 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7137369]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa39704 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko1081b Indel Unknown Unknown CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-rfx1b 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rfx1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rfx1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rfx1b-201 (1)    Ensembl 3138
    rfx1b-202 (1)    Ensembl 545
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rfx1b No data available
    MARKER RELATIONSHIPS
    rfx1b Contained in: [BAC] CH211-133L11 (1)
    rfx1b Encodes: [EST] IMAGE:7137369 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_021477396 (1)
    Genomic GenBank:AL929114 (1) 180158 nt
    Select Tool
    Polypeptide UniProtKB:F8W388 (1) 829 aa
    Sequence Information (all 11)
    ORTHOLOGY for rfx1b ( Chr: 1 )
    CITATIONS (19)