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ZIRC
ZFIN ID: ZDB-GENE-040924-2
Gene Name: charged multivesicular body protein 6b
Gene Symbol: chmp6b    Nomenclature History

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Previous Names: chmp6l, flj11749l, wu:fb79d02, zgc:110067

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to be involved in protein transport and vacuolar transport. Predicted to localize to the late endosome membrane. Orthologous to human CHMP6 (charged multivesicular body protein 6).
Genome Resources: Alliance (1),  Gene:445397 (1),  Ensembl(GRCz11):ENSDARG00000102024 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110067]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
PHENOTYPE
Data: 2 figures from 2 publications
Observed in:
DISEASE ASSOCIATED WITH chmp6b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH chmp6b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process protein transport (more)
Cellular Component endosome (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005024 (1)
  • Pfam:PF03357 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA chmp6b-202 (1)    Ensembl 686
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM chmp6b No data available
    MARKER RELATIONSHIPS
    chmp6b Contained in: [Fosmid] CH1073-108L19 (1) (order this)
    chmp6b Encodes: [EST] fb79d02 (1)
    [cDNA] MGC:110067 (1) (order this), MGC:191472 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003874 (1) 2442 bp
    Genomic GenBank:FO704669 (1) 43041 bp
    Select Tool
    Polypeptide UniProtKB:B2GPC9 (1) 206 aa
    Sequence Clusters UniGene:77489 (1)
    Sequence Information (all 23)
    ORTHOLOGY for chmp6b ( Chr: 12 )
    CITATIONS (28)