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ZIRC
ZFIN ID: ZDB-GENE-040912-165
Gene Name: interferon regulatory factor 9
Gene Symbol: irf9    Nomenclature History

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Previous Names: isgf3g (1), zgc:92097

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in immune system process. Predicted to localize to the nucleus. Is expressed in brain and kidney. Orthologous to human IRF9 (interferon regulatory factor 9).
Genome Resources: Alliance (1), Gene:403013 (1), Ensembl(GRCz11):ENSDARG00000016457 (2)
GENE EXPRESSION
All Expression Data: 8 figures from 7 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92097]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa4457 Point Mutation Unknown Premature Stop ENU
sa6239 Point Mutation Unknown Premature Stop ENU
sa17117 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-irf9
    2
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH irf9 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Immunodeficiency 65, susceptibility to viral infections 618648
    DISEASE ASSOCIATED WITH irf9 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript irf9-203 (1)    Ensembl 614
    mRNA irf9-201 (1)    Ensembl 1767
    irf9-202 (1)    Ensembl 538
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM irf9No data available
    MARKER RELATIONSHIPS
    irf9Contained in: [BAC] CH211-198P7 (1) (order this)
    irf9Encodes: [cDNA] MGC:92097 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205710 (1) 1772bp
    Genomic GenBank:BX571950 (1) 196442bp
    Select Tool
    Polypeptide UniProtKB:F1Q573 (1) 428aa
    Sequence Clusters UniGene:133138 (1)
    Sequence Information (all 21)
    ORTHOLOGY for irf9 (Chr: 12)
    CITATIONS (41)