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ZIRC
ZFIN ID: ZDB-GENE-040826-5
Gene Name: solute carrier family 35 member D1a
Gene Symbol: slc35d1a    Nomenclature History

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Previous Name: slc35d1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to localize to the Golgi apparatus. Human ortholog(s) of this gene implicated in schneckenbecken dysplasia. Is expressed in Kupffer's vesicle; forerunner cell group; otic vesicle; and pharyngeal arch. Orthologous to human SLC35D1 (solute carrier family 35 member D1).
Genome Resources: Alliance (1),  Gene:445400 (1),  Ensembl(GRCz11):ENSDARG00000011973 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2004 [IMAGE:7156746]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3378Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa6070 Point Mutation Unknown Premature Stop ENU
    sa40729 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH slc35d1a HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    schneckenbecken dysplasia Alliance Schneckenbecken dysplasia 269250
    DISEASE ASSOCIATED WITH slc35d1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function antiporter activity (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004853 (1)
  • Pfam:PF03151 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slc35d1a-201 (1)    Ensembl 2351
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slc35d1a No data available
    MARKER RELATIONSHIPS
    slc35d1a Contained in: [BAC] DKEYP-63D11 (1)
    slc35d1a Encodes: [EST] IMAGE:7156746 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003877 (1) 1251 bp
    Genomic GenBank:BX323033 (1) 171058 bp
    Select Tool
    Polypeptide UniProtKB:F1QZD9 (1) 336 aa
    Sequence Clusters UniGene:79767 (1)
    Sequence Information (all 13)
    ORTHOLOGY for slc35d1a ( Chr: 6 )
    CITATIONS (26)