ZFIN ID: ZDB-GENE-040812-2
Gene Name: caprin family member 2
Gene Symbol: caprin2
Sequence Ontology ID : SO:0000704

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Previous Names: c1qdc1 (1), wu:fj80b02

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity and metal ion binding activity; involved in dorsal/ventral pattern formation, positive regulation of Wnt signaling pathway involved in dorsal/ventral axis  ...
GENE EXPRESSION
All Expression Data: text only from Ding et al., 2008
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6049 Point Mutation Unknown Premature Stop ENU
sa12256 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12716 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14869 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 3 from Ding et al., 2008
    Observed in:
    DISEASE ASSOCIATED WITH caprin2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH caprin2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal/ventral pattern formation (more)
    Cellular Component cytoplasm (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001073 (1)
  • InterPro:IPR008983 (1)
  • InterPro:IPR022070 (1)
  • InterPro:IPR028816 (1)
  • PROSITE:PS50871 (1)
  • Pfam:PF00386 (1)
  • Pfam:PF12287 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA caprin2-002 (1) 1871
    mRNA caprin2-201 (1) 3625
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM caprin2 No data available
    MARKER RELATIONSHIPS
    caprin2Contained in: [BAC] CH211-11C20 (1) (order this)
    caprin2Encodes: [EST] fj80b02 (1)
    [cDNA] MGC:171363 (1) (order this), MGC:198441 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001013273 (1) 3625bp
    Genomic GenBank:BX001012 (1) 158481bp
    Select Tool
    Polypeptide UniProtKB:B7ZVU9 (1) 914aa
    Sequence Clusters UniGene:81341 (1)
    Sequence Information (all 23)
    OTHER caprin2 GENE PAGES
  • Alliance (1)
  • Gene:407729 (1)
  • VEGA:OTTDARG00000008111 (1)
  • Ensembl(GRCz11):ENSDARG00000020749 (1)
  • ORTHOLOGY for caprin2 (Chr: 4)
    CITATIONS (28)