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ZIRC
ZFIN ID: ZDB-GENE-040801-91
Gene Name: alanyl-tRNA synthetase domain containing 1
Gene Symbol: aarsd1    Nomenclature History

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Previous Names: im:7152658, zgc:101066 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have Ser-tRNA(Ala) hydrolase activity. Predicted to be involved in regulation of translational fidelity. Predicted to localize to the cytoplasm. Is expressed in midbrain; myotome; optic vesicle; pectoral fin; and retina. Orthologous to several human genes including AARSD1 (alanyl-tRNA synthetase domain containing 1).
Genome Resources: Alliance (1),  Gene:445178 (1),  Ensembl(GRCz11):ENSDARG00000015747 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18183 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41961 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH aarsd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH aarsd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process translation (more)
    Cellular Component cytoplasm (more)
    Molecular Function aminoacyl-tRNA ligase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009000 (1)
  • InterPro:IPR012947 (1)
  • InterPro:IPR018163 (1)
  • Pfam:PF07973 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA aarsd1-201 (1)    Ensembl 1589
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM aarsd1 No data available
    MARKER RELATIONSHIPS
    aarsd1 Contained in: [BAC] CH211-215L11 (1) (order this)
    aarsd1 Encodes: [EST] IMAGE:7152658 (1) (order this)
    [cDNA] MGC:101066 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003572 (1) 1603 bp
    Genomic GenBank:BX248126 (1) 193490 bp
    Select Tool
    Polypeptide UniProtKB:F1QPA7 (1) 412 aa
    Sequence Clusters UniGene:88663 (1)
    Sequence Information (all 12)
    ORTHOLOGY for aarsd1 ( Chr: 12 )
    CITATIONS (21)