ZFIN ID: ZDB-GENE-040801-91
Gene Name: alanyl-tRNA synthetase domain containing 1
Gene Symbol: aarsd1    Nomenclature History

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Previous Names: im:7152658, zgc:101066 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have Ser-tRNA(Ala) hydrolase activity. Predicted to be involved in regulation of translational fidelity. Predicted to localize to cytoplasm. Is expressed in midbrain; myotome; optic vesicle; pectoral fin; and retina. Orthologous to several human genes including PTGES3L-AARSD1 (PTGES3L-AARSD1 readthrough).
Genome Resources: Alliance (1),  Gene:445178 (1),  Ensembl(GRCz11):ENSDARG00000015747 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [IMAGE:7152658]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18183 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41961 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH aarsd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH aarsd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process translation (more)
    Cellular Component cytoplasm (more)
    Molecular Function aminoacyl-tRNA ligase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA aarsd1-201 (1)    Ensembl 1589
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM aarsd1 No data available
    MARKER RELATIONSHIPS
    aarsd1 Contained in: [BAC] CH211-215L11 (1)
    aarsd1 Encodes: [EST] IMAGE:7152658 (1)
    [cDNA] MGC:101066 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003572 (1) 1603 nt
    Genomic GenBank:BX248126 (1) 193490 nt
    Select Tool
    Polypeptide UniProtKB:F1QPA7 (1) 412 aa
    Sequence Information (all 11)
    ORTHOLOGY for aarsd1 ( Chr: 12 )
    CITATIONS (23)