ZFIN ID: ZDB-GENE-040801-236
Gene Name: SDS3 homolog, SIN3A corepressor complex component
Gene Symbol: suds3    Nomenclature History

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Previous Names: sds3l (1), zgc:92021

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to contribute to histone deacetylase activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to localize to Sin3-type complex. Orthologous to human SUDS3 (SDS3 homolog, SIN3A corepressor complex component).
Genome Resources: Alliance (1),  Gene:445099 (1),  Ensembl(GRCz11):ENSDARG00000073737 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7154012]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2639bTg Transgenic Insertion Exon 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la010220Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9868 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40378 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH suds3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH suds3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process histone deacetylation (more)
    Cellular Component Sin3-type complex (more)
    Molecular Function CONTRIBUTES_TO   histone deacetylase activity (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA suds3-201 (1)    Ensembl 1544
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM suds3 No data available
    MARKER RELATIONSHIPS
    suds3 Contained in: [BAC] CH73-342D12 (1), CH211-241M24 (1)
    suds3 Encodes: [EST] IMAGE:7154012 (1)
    [cDNA] MGC:92021 (1), MGC:173818 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003493 (1) 1575 nt
    Genomic GenBank:CU694999 (1) 104147 nt
    Select Tool
    Polypeptide UniProtKB:B8JJJ2 (1) 326 aa
    Sequence Information (all 25)
    ORTHOLOGY for suds3 ( Chr: 5 )
    CITATIONS (27)