ZFIN ID: ZDB-GENE-040801-133
Gene Name: RIO kinase 3 (yeast)
Gene Symbol: riok3    Nomenclature History

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Previous Names: fb10c11, wu:fb10c11, zgc:100972

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to have protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to localize to the cytosol and preribosome, small subunit precursor. Is expressed in axis; myotome; and somite. Orthologous to human RIOK3 (RIO kinase 3).
Genome Resources: Alliance (1),  Gene:445220 (1),  Ensembl(GRCz11):ENSDARG00000042751 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [IMAGE:7147995]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa3260 Point Mutation Unknown Splice Site ENU
sa44177 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH riok3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH riok3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process phosphorylation (more)
    Cellular Component cytosol (more)
    Molecular Function ATP binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR018935 RIO kinase, conserved site
    Domain IPR000687 RIO kinase
    Family IPR017406 Serine/threonine-protein kinase Rio3
    Homologous_superfamily IPR011009 Protein kinase-like domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA riok3-201 (1)    Ensembl 1821
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM riok3 No data available
    MARKER RELATIONSHIPS
    riok3 Contained in: [BAC] CH211-40K21 (1)
    riok3 Encodes: [EST] fb10c11, IMAGE:7147995 (1)
    [cDNA] MGC:100972 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003614 (1) 1811 nt
    Genomic GenBank:FP089511 (1) 158292 nt
    Select Tool
    Polypeptide UniProtKB:F1QCP9 (1) 507 aa
    Sequence Information (all 13)
    ORTHOLOGY for riok3 ( Chr: 24 )
    CITATIONS (21)