ZFIN ID: ZDB-GENE-040720-1
Gene Name: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Gene Symbol: ctdp1
Sequence Ontology ID : SO:0000704

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Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity; predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain; predicted to localize to the  ...
GENE EXPRESSION No data available
PHENOTYPE
Data: 2 figures from 2 publications
Observed in:
DISEASE ASSOCIATED WITH ctdp1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Congenital cataracts, facial dysmorphism, and neuropathy 604168
DISEASE ASSOCIATED WITH ctdp1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process dephosphorylation of RNA polymerase II C-terminal domain (more)
Cellular Component nucleus (more)
Molecular Function phosphoprotein phosphatase activity (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001357 (1)
  • InterPro:IPR004274 (1)
  • InterPro:IPR011053 (1)
  • InterPro:IPR011947 (1)
  • InterPro:IPR015388 (1)
  • InterPro:IPR023214 (1)
  • InterPro:IPR036412 (1)
  • InterPro:IPR036420 (1)
  • InterPro:IPR039189 (1)
  • PROSITE:PS50172 (1)
  • PROSITE:PS50969 (1)
  • Pfam:PF03031 (1)
  • Pfam:PF09309 (1)
  • Pfam:PF12738 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ctdp1-201 (1) 3022
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ctdp1 No data available
    MARKER RELATIONSHIPS
    ctdp1Contained in: [BAC] CH211-139E14 (1) (order this), CH211-169C1 (1) (order this), DKEY-261N3 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002873 (1) 2868bp
    Genomic GenBank:CR548625 (1) 195124bp
    Select Tool
    Polypeptide UniProtKB:E7FFL3 (1) 947aa
    Sequence Clusters UniGene:133831 (1)
    Sequence Information (all 12)
    OTHER ctdp1 GENE PAGES
  • Alliance (1)
  • Gene:442930 (1)
  • VEGA:OTTDARG00000034715 (1)
  • Ensembl(GRCz11):ENSDARG00000017522 (2)
  • ORTHOLOGY for ctdp1 (Chr: 19)
    CITATIONS (20)