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ZIRC
ZFIN ID: ZDB-GENE-040718-354
Gene Name: serine and arginine rich splicing factor 5b
Gene Symbol: srsf5b
Sequence Ontology ID : SO:0000704

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Previous Names: sfrs5b, wu:fe15e05 (1), zgc:113907, zgc:92278 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92278]
  1 figure (1 image) from Thisse et al., 2004 [MGC:113907]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ulg0032 Small Deletion Exon 2 Unknown TALEN
ulg0033 Small Deletion Exon 2 Unknown CRISPR
Targeting reagents:
PHENOTYPE
Data: Fig. 2 from Joris et al., 2017
Observed in:
DISEASE ASSOCIATED WITH srsf5b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH srsf5b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA cis splicing, via spliceosome (more)
Cellular Component nuclear speck (more)
Molecular Function nucleic acid binding (more)
GO Terms (all 6)
TRANSCRIPTS
Type Name Length (bp) Analysis
ncRNA srsf5b-005 (1) 559
mRNA srsf5b-202 (1) 1707
srsf5b-203 (1) 835
srsf5b-204 (1) 2640
srsf5b-205 (1) 715
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM srsf5b No data available
MARKER RELATIONSHIPS
srsf5bContained in: [BAC] DKEY-11E23 (1) (order this)
srsf5bEncodes: [EST] fe15e05, fk88c07 (1)
[cDNA] MGC:92278 (1) (order this), MGC:113907 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001002610 (1) 2660bp
Genomic GenBank:AL928866 (1) 249759bp Blast at MegaBLAST
Polypeptide UniProtKB:Q6DHJ0 (1) 285aa
Sequence Clusters UniGene:80489 (1)
Sequence Information (all 27)
ORTHOLOGY for srsf5b (Chr: 20)
CITATIONS (24)