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ZIRC
ZFIN ID: ZDB-GENE-040718-354
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Gene Name: serine and arginine rich splicing factor 5b
Gene Symbol: srsf5b
Sequence Ontology ID : SO:0000704

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Previous Names: sfrs5b, wu:fe15e05 (1), zgc:113907, zgc:92278 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92278]
  1 figure (1 image) from Thisse et al., 2004 [MGC:113907]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ulg0032 Small Deletion Exon 2 Unknown TALEN
ulg0033 Small Deletion Exon 2 Unknown CRISPR
Targeting reagents:
PHENOTYPE
Data: Fig. 2 from Joris et al., 2017
Observed in:
DISEASE ASSOCIATED WITH srsf5b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH srsf5b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA cis splicing, via spliceosome (more)
Cellular Component nuclear speck (more)
Molecular Function nucleic acid binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR035585 (1)
  • InterPro:IPR035979 (1)
    		•
  • PROSITE:PS50102 (1)
    		•
  • Pfam:PF00076 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA srsf5b-005 (1) 559
    Select Tool
    mRNA srsf5b-202 (1) 1707
    Select Tool
    srsf5b-203 (1) 835
    Select Tool
    srsf5b-204 (1) 2640
    Select Tool
    srsf5b-205 (1) 715
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM srsf5b No data available
    MARKER RELATIONSHIPS
    srsf5bContained in: [BAC] DKEY-11E23 (1) (order this)
    srsf5bEncodes: [EST] fe15e05, fk88c07 (1)
    [cDNA] MGC:92278 (1) (order this), MGC:113907 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002610 (1) 2660bp
    Select Tool
    Genomic GenBank:AL928866 (1) 249759bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6DHJ0 (1) 285aa
    Select Tool
    Sequence Clusters UniGene:80489 (1)
    Sequence Information (all 27)
    OTHER srsf5b GENE PAGES
  • Alliance (1)
  • Gene:436883 (1)
  • VEGA:OTTDARG00000005698 (1)
  • Ensembl(GRCz11):ENSDARG00000027734 (2)
    • ORTHOLOGY for srsf5b (Chr: 20)
    CITATIONS (24)