Gene
srsf5b
- ID
- ZDB-GENE-040718-354
- Name
- serine and arginine rich splicing factor 5b
- Symbol
- srsf5b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Predicted to have mRNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).
- Genome Resources
- Note
- None
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- No data available
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Joris et al., 2017
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR035585 | Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1 |
|---|---|---|---|---|---|
|
UniProtKB:Q5SPH2
|
138 | ||||
|
UniProtKB:Q6DHJ0
|
285 | ||||
|
UniProtKB:Q5SPH1
|
158 | ||||
|
UniProtKB:Q4V988
|
164 |
| Type | Name | Length (nt) | Analysis |
|---|---|---|---|
| mRNA |
srsf5b-202
(1)
|
1707 nt | |
| mRNA |
srsf5b-203
(1)
|
835 nt | |
| mRNA |
srsf5b-204
(1)
|
2640 nt | |
| mRNA |
srsf5b-205
(1)
|
715 nt | |
| ncRNA |
srsf5b-005
(1)
|
559 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Gene Tree
- Ensembl