ZFIN ID: ZDB-GENE-040718-352
Gene Name: GP1 homolog, RAB6A GEF complex partner 1
Gene Symbol: rgp1    Nomenclature History

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Previous Name: zgc:92283

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have Rab guanyl-nucleotide exchange factor activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to localize to Golgi membrane and RIC1-RGP1 guanyl-nucleotide exchange factor complex. Orthologous to human RGP1 (RGP1 homolog, RAB6A GEF complex partner 1).
Genome Resources: Alliance (1),  Gene:436881 (1),  Ensembl(GRCz11):ENSDARG00000006545 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92283]
  1 figure (1 image) from Thisse et al., 2005 [eu978]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011553Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9882 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20929 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38608 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-rgp1
    1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rgp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rgp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process retrograde transport, endosome to Golgi (more)
    Cellular Component cytosol (more)
    Molecular Function Rab GTPase binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rgp1-201 (1)    Ensembl 1984
    rgp1-202 (1)    Ensembl 398
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rgp1 No data available
    MARKER RELATIONSHIPS
    rgp1 Contained in: [BAC] CH211-69E13 (1)
    rgp1 Encodes: [EST] eu978 (1)
    [cDNA] MGC:92283 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001002608 (1) 1625 nt
    Genomic GenBank:BX510349 (1) 152064 nt
    Select Tool
    Polypeptide UniProtKB:Q6DHI8 (1) 386 aa
    Sequence Information (all 11)
    ORTHOLOGY for rgp1 ( Chr: 7 )
    CITATIONS (21)