ZFIN ID: ZDB-GENE-040718-274
Gene Name: adaptor related protein complex 3 subunit sigma 2
Gene Symbol: ap3s2    Nomenclature History

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Previous Name: zgc:92795

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Predicted to be involved in vesicle-mediated transport. Predicted to localize to the intracellular membrane-bounded organelle. Orthologous to human AP3S2 (adaptor related protein complex 3 subunit sigma 2).
Genome Resources: Alliance (1),  Gene:436812 (1),  Ensembl(GRCz11):ENSDARG00000039882 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92795]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023120Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-ap3s2 N/A 1
    MO2-ap3s2 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ap3s2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ap3s2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular protein transport (more)
    Cellular Component membrane (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR000804 Clathrin adaptor complex, small chain
    Homologous_superfamily IPR011012 Longin-like domain superfamily
    Family IPR016635 Adaptor protein complex, sigma subunit
    Domain IPR022775 AP complex, mu/sigma subunit
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ap3s2-201 (1)    Ensembl 1009
    ap3s2-202 (1)    Ensembl 613
    ap3s2-204 (1)    Ensembl 858
    ncRNA ap3s2-002 (1)    Ensembl 720
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ap3s2 No data available
    MARKER RELATIONSHIPS
    ap3s2 Contained in: [BAC] DKEY-167J6 (1) (order this)
    ap3s2 Encodes: [cDNA] MGC:92795 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002539 (1) 1043 bp
    Genomic GenBank:BX572619 (1) 171026 bp
    Select Tool
    Polypeptide UniProtKB:Q6DGS0 (1) 192 aa
    Sequence Information (all 10)
    ORTHOLOGY for ap3s2 ( Chr: 25 )
    CITATIONS (24)