ZFIN ID: ZDB-GENE-040718-259
Gene Name: ATPase H+ transporting V1 subunit F
Gene Symbol: atp6v1f    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:92923

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have ATPase-coupled ion transmembrane transporter activity. Involved in several processes, including Kupffer's vesicle development; notochord cell vacuolation; and regulation of heart looping. Localizes to plasma membrane. Is expressed in central nervous system; diencephalon; epiphysis; mucus secreting cell; and telencephalon. Orthologous to human ATP6V1F (ATPase H+ transporting V1 subunit F).
Genome Resources: Alliance (1),  Gene:436799 (1),  Ensembl(GRCz11):ENSDARG00000045543 (2)
GENE EXPRESSION
All Expression Data: 9 figures from 4 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2004 [MGC:92923]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1988Tg Transgenic Insertion Exon 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la015363Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-atp6v1f N/A 1
    DISEASE ASSOCIATED WITH atp6v1f HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atp6v1f VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of heart looping (more)
    Cellular Component plasma membrane (more)
    Molecular Function proton-transporting ATPase activity, rotational mechanism (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atp6v1f-201 (1)    Ensembl 778
    ncRNA atp6v1f-002 (1)    Ensembl 619
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atp6v1f No data available
    MARKER RELATIONSHIPS
    atp6v1f Contained in: [BAC] DKEY-159A18 (1) (order this)
    atp6v1f Encodes: [cDNA] MGC:92923 (1), MGC:192096 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001002526 (1) 976 nt
    Genomic GenBank:BX890616 (1) 74749 nt
    Select Tool
    Polypeptide UniProtKB:Q6DRK0 (1) 119 aa
    Sequence Information (all 16)
    ORTHOLOGY for atp6v1f ( Chr: 4 )
    CITATIONS (38)