Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-040718-174
Gene Name: ATPase, Ca++ transporting, plasma membrane 3a
Gene Symbol: atp2b3a
Previous Names: atp2b3, pmca3a (1), zgc:92885 (1)
Location: Chr: 8   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2004 [MGC:92885]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  blood, brain, central nervous system, cranial ganglion (all 14) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: la016259Tg, sa10745
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
?Spinocerebellar ataxia, X-linked 1 302500
GENE ONTOLOGY
Ontology GO Term
Biological Process calcium ion transmembrane transport (more)
Cellular Component integral component of membrane (more)
Molecular Function ATP binding (more)
GO Terms (all 11)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001757 (1)
  • InterPro:IPR004014 (1)
  • InterPro:IPR006068 (1)
  • InterPro:IPR006408 (1)
  • InterPro:IPR008250 (1)
  • InterPro:IPR018303 (1)
  • InterPro:IPR022141 (1)
  • InterPro:IPR023214 (1)
  • InterPro:IPR023298 (1)
  • InterPro:IPR023299 (1)
  • PROSITE:PS00154 (1)
  • Pfam:PF00122 (1)
  • Pfam:PF00689 (1)
  • Pfam:PF00690 (1)
  • Pfam:PF00702 (1)
  • Pfam:PF12424 (1)
  • EC:3.6.3.8 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atp2b3a-001 (1) 4671
    atp2b3a-002 (1) 3635
    ncRNA atp2b3a-003 (1) 756
    mRNA atp2b3a-004 (1) 901
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atp2b3a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    atp2b3a Contained in: [BAC] CH211-229N2 (1) (order this), DKEYP-110G5 (1)
    atp2b3a Encodes: [cDNA] MGC:92885 (1) (order this)
    atp2b3a Has Artifact: [EST] fk54d07
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002472 (1) 3965 bp
    Genomic GenBank:CT025854 (1) 184858 bp
    Select Tool
    Polypeptide UniProtKB:B0S5H3 (1) 1248 aa
    Sequence Clusters UniGene:81961 (1)
    Sequence Information (all 28)
    OTHER atp2b3a GENE PAGES
  • Gene:436745 (1)
  • VEGA:OTTDARG00000022120 (1)
  • Ensembl(Zv9):ENSDARG00000043474 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish atp2b3a 8  
    Human ATP2B3 X (Xq28)
  • OMIM:300014
  • Gene:492
  • Mouse Atp2b3 X ( 37.33 cM)
  • MGI:1347353
  • Gene:320707
  • Orthology Details
    CITATIONS (21)