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ZIRC
ZFIN ID: ZDB-GENE-040718-155
Gene Name: SIX homeobox 1a
Gene Symbol: six1a
Sequence Ontology ID : SO:0001217

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Previous Names: six1b (1), six2, zgc:92332 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of inner ear receptor cell differentiation; regulation of skeletal muscle cell proliferation;  ...
GENE EXPRESSION
All Expression Data: 9 figures from 4 publications
Directly Submitted Expression Data: 5 figures (9 images) from Thisse et al., 2004 [IMAGE:7154851]
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011534Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • oz8 Indel Unknown Frameshift CRISPR
    oz9 Insertion Unknown Unknown CRISPR
    sa17539 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH six1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant nonsyndromic deafness 23 Deafness, autosomal dominant 23 605192
    branchiootic syndrome Branchiootic syndrome 3 608389
    DISEASE ASSOCIATED WITH six1a VIA EXPERIMENTAL MODELS No data available
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA six1a-201 (1) 1573
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM six1a No data available
    MARKER RELATIONSHIPS
    six1a Contained in: [BAC] CH211-202M24 (1) (order this)
    six1a Encodes: [EST] IMAGE:7154851 (1) (order this)
    [cDNA] MGC:92332 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001009904 (1) 1610 bp
    Genomic GenBank:BX537123 (1) 202967 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6DHF9 (1) 283 aa
    Sequence Clusters UniGene:88608 (1)
    Sequence Information (all 18)
    ORTHOLOGY for six1a ( Chr: 13 )
    CITATIONS (37)