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ZIRC
ZFIN ID: ZDB-GENE-040718-139
Gene Name: SET binding factor 1
Gene Symbol: sbf1    Nomenclature History

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Previous Names: wu:fj45d12, zgc:92634 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have phosphatase regulator activity. Predicted to be involved in regulation of GTPase activity. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4B3. Orthologous to human SBF1 (SET binding factor 1).
Genome Resources: Alliance (1),  Gene:568277 (1),  Ensembl(GRCz11):ENSDARG00000062968 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92634]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la029046Tg Transgenic Insertion Unknown Unknown DNA
sa1433 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1459 Point Mutation Unknown Splice Site ENU
    sa11843 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20215 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25276 Point Mutation Unknown Premature Stop ENU
    sa26228 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33397 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa33398 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38424 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45166 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sbf1 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Charcot-Marie-Tooth disease type 4B3 Alliance Charcot-Marie-Tooth disease, type 4B3 615284
    DISEASE ASSOCIATED WITH sbf1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of GTPase activity (more)
    Cellular Component cellular_component (more)
    Molecular Function phosphatase regulator activity (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sbf1-202 (1)    Ensembl 7372
    ncRNA sbf1-002 (1)    Ensembl 646
    sbf1-003 (1)    Ensembl 1771
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sbf1 No data available
    MARKER RELATIONSHIPS
    sbf1 Contained in: [BAC] DKEY-22L11 (1) (order this)
    sbf1 Encodes: [EST] fj45d12 (1)
    [cDNA] MGC:92634 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045158 (1) 7372 bp
    Genomic GenBank:BX248111 (1) 185023 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8PWA9 (1) 1936 aa
    Sequence Clusters UniGene:81066 (1)
    Sequence Information (all 30)
    ORTHOLOGY for sbf1 ( Chr: 4 )
    CITATIONS (24)