ZFIN ID: ZDB-GENE-040718-113
Gene Name: ependymin related 1
Gene Symbol: epdr1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:92674 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to localize to lysosome. Is expressed in hindbrain; midbrain hindbrain boundary; optic stalk; spinal cord; and telencephalon. Orthologous to human EPDR1 (ependymin related 1).
Genome Resources: Alliance (1),  Gene:436689 (1),  Ensembl(GRCz11):ENSDARG00000045420 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92674]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa19796 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38339 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39860 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • uy220Tg Transgenic Insertion Exon 1 Unknown DNA_AND_CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-epdr1 2
    DISEASE ASSOCIATED WITH epdr1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH epdr1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell-matrix adhesion (more)
    Cellular Component extracellular region (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA epdr1-201 (1)    Ensembl 1437
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM epdr1 No data available
    MARKER RELATIONSHIPS
    epdr1 Contained in: [BAC] DKEYP-13D12 (1)
    epdr1 Encodes: [cDNA] MGC:92674 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001002416 (1) 1419 nt
    Genomic GenBank:BX323064 (1) 170480 nt
    Select Tool
    Polypeptide UniProtKB:Q6DH25 (1) 206 aa
    Sequence Information (all 9)
    ORTHOLOGY for epdr1 ( Chr: 2 )
    CITATIONS (22)