ZFIN ID: ZDB-GENE-040709-2
Gene Name: cleavage and polyadenylation specific factor 1
Gene Symbol: cpsf1
Sequence Ontology ID : SO:0000704

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Previous Name: wu:fb24c01

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Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6894052]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2675Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16124 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23476 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29173 Point Mutation Unknown Splice Site ENU
    sa36798 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zdfI8a12 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: 7 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH cpsf1 HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process definitive hemopoiesis (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004871 (1)
  • InterPro:IPR015943 (1)
  • Pfam:PF03178 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cpsf1-001 (1) 4746
    ncRNA cpsf1-002 (1) 1767
    cpsf1-003 (1) 3549
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cpsf1 No data available
    MARKER RELATIONSHIPS
    cpsf1Contained in: [BAC] CH211-169C1 (1) (order this)
    cpsf1Encodes: [EST] fb24c01, IMAGE:6894052 (1) (order this)
    [cDNA] MGC:171224 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001114681 (1) 1780bp
    Genomic GenBank:CU467825 (1) 119744bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IC37 (1) 1451aa
    Sequence Clusters UniGene:5022 (1)
    Sequence Information (all 29)
    OTHER cpsf1 GENE PAGES
  • Alliance (1)
  • Gene:432372 (1)
  • VEGA:OTTDARG00000029317 (1)
  • Ensembl(GRCz11):ENSDARG00000034178 (1)
  • ORTHOLOGY for cpsf1 (Chr: 19)
    CITATIONS (26)