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ZIRC
ZFIN ID: ZDB-GENE-040704-75
Gene Name: rhomboid 5 homolog 1a (Drosophila)
Gene Symbol: rhbdf1a    Nomenclature History

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Previous Names: rhbdf1, zgc:91984

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have growth factor binding activity and serine-type endopeptidase activity. Predicted to be involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Predicted to localize to the Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).
Genome Resources: Alliance (1),  Gene:798402 (1),  Ensembl(GRCz11):ENSDARG00000036541 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la024310Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33325 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33326 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rhbdf1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rhbdf1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell migration (more)
    Cellular Component endoplasmic reticulum membrane (more)
    Molecular Function growth factor binding (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR022241 (1)
  • InterPro:IPR022764 (1)
  • InterPro:IPR035952 (1)
  • Pfam:PF01694 (1)
  • Pfam:PF12595 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rhbdf1a-201 (1)    Ensembl 3541
    rhbdf1a-202 (1)    Ensembl 800
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rhbdf1a No data available
    MARKER RELATIONSHIPS
    rhbdf1a Contained in: [BAC] CH211-287M16 (1) (order this), DKEY-189N21 (1) (order this)
    rhbdf1a Encodes: [cDNA] MGC:91984 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002228 (1) 3542 bp
    Genomic GenBank:AL929130 (1) 149702 bp
    Select Tool
    Polypeptide UniProtKB:Q6GMF8 (1) 857 aa
    Sequence Clusters UniGene:32169 (1)
    Sequence Information (all 17)
    ORTHOLOGY for rhbdf1a ( Chr: 3 )
    CITATIONS (22)