ZFIN ID: ZDB-GENE-040704-23
Gene Name: lipopolysaccharide-induced TNF factor
Gene Symbol: litaf
Previous Names: fb12g04, id:ibd5018 (1), wu:fb12g04 (1), zgc:91882
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 2 figures (2 images) from Kudoh et al., 2001 [ibd5018]
  6 figures (7 images) from Thisse et al., 2004 [MGC:91882]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  pronephric duct, pronephric duct opening
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH litaf HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Charcot-Marie-Tooth disease type 1 Charcot-Marie-Tooth disease, type 1C 601098
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component cytoplasm (more)
Molecular Function molecular_function (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006629 (1)
  • Pfam:PF10601 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA litaf-001 (1) 2247
    litaf-002 (1) 787
    litaf-003 (1) 304
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM litaf No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    litafContained in: [BAC] RP71-10D19 (1) (order this)
    litafEncodes: [EST] fb12g04, ibd5018 (order this)
    [cDNA] MGC:91882 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002184 (1) 2040bp
    Genomic GenBank:BX324229 (1) 72241bp
    Select Tool
    Polypeptide UniProtKB:Q6GMG8 (1) 163aa
    Sequence Clusters UniGene:76612 (1)
    Sequence Information (all 17)
    OTHER litaf GENE PAGES
  • Gene:431731 (1)
  • VEGA:OTTDARG00000020288 (1)
  • Ensembl(GRCz10):ENSDARG00000103483 (1)
  • ORTHOLOGY for litaf (Chr: 3)
    Species Symbol Chromosome Accession # Evidence
    Human LITAF 16
  • Gene:9516
  • OMIM:603795
  • HGNC:16841
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Mouse Litaf 16
  • MGI:1929512
  • Gene:56722
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (19)