ZFIN ID: ZDB-GENE-040704-23
Gene Name: lipopolysaccharide-induced TNF factor
Gene Symbol: litaf
Sequence Ontology ID : SO:0000704

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Previous Names: fb12g04, id:ibd5018 (1), wu:fb12g04 (1), zgc:91882

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 2 figures (2 images) from Kudoh et al., 2001 [ibd5018]
  6 figures (7 images) from Thisse et al., 2004 [MGC:91882]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  pronephric duct, pronephric duct opening
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH litaf HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Charcot-Marie-Tooth disease type 1C Charcot-Marie-Tooth disease, type 1C 601098
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component cytoplasmic side of early endosome membrane (more)
Molecular Function zinc ion binding (more)
GO Terms (all 17)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006629
  • Pfam:PF10601
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA litaf-001 (1) 2247
    litaf-002 (1) 787
    litaf-003 (1) 304
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM litaf No data available
    MARKER RELATIONSHIPS
    litafContained in: [BAC] RP71-10D19 (1) (order this)
    litafEncodes: [EST] fb12g04, ibd5018 (order this)
    [cDNA] MGC:91882 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002184 (1) 2040bp
    Genomic GenBank:BX324229 (1) 72241bp
    Select Tool
    Polypeptide UniProtKB:Q6GMG8 163aa
    Sequence Clusters UniGene:76612 (1)
    Sequence Information (all 18)
    OTHER litaf GENE PAGES
  • Gene:431731 (1)
  • VEGA:OTTDARG00000020288 (1)
  • Ensembl(GRCz10):ENSDARG00000103483 (1)
  • ORTHOLOGY for litaf (Chr: 3)
    CITATIONS (19)