Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-040704-23
Gene Name: lipopolysaccharide-induced TNF factor
Gene Symbol: litaf
Previous Names: fb12g04, id:ibd5018 (1), wu:fb12g04 (1), zgc:91882
Location: Chr: 3   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 2 figures (2 images) from Kudoh et al., 2001 [ibd5018]
  6 figures (7 images) from Thisse et al., 2004 [MGC:91882]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  pronephric duct, pronephric duct opening
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS No data available
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Charcot-Marie-Tooth disease, type 1C 601098
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component cytoplasm (more)
Molecular Function molecular_function (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006629 (1)
  • Pfam:PF10601 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA litaf-001 (1) 2247
    litaf-002 (1) 787
    litaf-003 (1) 304
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM litaf No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    litaf Contained in: [BAC] RP71-10D19 (1) (order this)
    litaf Encodes: [EST] fb12g04, ibd5018 (order this)
    [cDNA] MGC:91882 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002184 (1) 2040 bp
    Genomic GenBank:BX324229 (1) 72241 bp
    Select Tool
    Polypeptide UniProtKB:Q6GMG8 (1) 163 aa
    Sequence Clusters UniGene:76612 (1)
    Sequence Information (all 15)
    OTHER litaf GENE PAGES
  • Gene:431731 (1)
  • VEGA:OTTDARG00000020288 (1)
  • Ensembl(Zv9):ENSDARG00000052666 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish litaf 3  
    Human LITAF 16 (16p13.13)
  • OMIM:603795
  • Gene:9516
  • Mouse Litaf 16 ( 6.28 cM)
  • MGI:1929512
  • Gene:56722
  • Orthology Details
    CITATIONS (18)