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ZIRC
ZFIN ID: ZDB-GENE-040704-13
Gene Name: syntrophin, basic 1
Gene Symbol: sntb1    Nomenclature History

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Previous Name: zgc:92432

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have structural molecule activity. Predicted to localize to the dystrophin-associated glycoprotein complex and synapse. Is expressed in epidermis; forebrain; otic vesicle; and pronephric duct. Orthologous to human SNTB1 (syntrophin beta 1).
Genome Resources: Alliance (1),  Gene:431722 (1),  Ensembl(GRCz11):ENSDARG00000041729 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [MGC:92432]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027682Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16267 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36075 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45569 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sntb1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sntb1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component dystrophin-associated glycoprotein complex (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 4)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sntb1-201 (1)    Ensembl 1849
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sntb1 No data available
    MARKER RELATIONSHIPS
    sntb1 Contained in: [BAC] CH211-36B24 (1) (order this)
    sntb1 Encodes: [EST] fj44a01
    [STS] chunp6623
    [cDNA] MGC:92432 (1) (order this), MGC:192377 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002175 (1) 2045 bp
    Genomic GenBank:CU179642 (1) 195000 bp
    Select Tool
    Polypeptide UniProtKB:Q6GMG2 (1) 515 aa
    Sequence Clusters UniGene:79252 (1)
    Sequence Information (all 19)
    ORTHOLOGY for sntb1 ( Chr: 16 )
    CITATIONS (23)