ZFIN ID: ZDB-GENE-040702-6
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Gene Name: nuclear receptor subfamily 5, group A, member 1b
Gene Symbol: nr5a1b
Sequence Ontology ID : SO:0000704

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Previous Names: nr5a2l, SF1-B (1), ff1d (1)

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 7 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2008 [ay212920]
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12365 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa15009 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa15470 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23855 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37234 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH nr5a1b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    46 XY gonadal dysgenesis 46XY sex reversal 3 612965
    azoospermia Spermatogenic failure 8 613957
    premature ovarian failure Adrenocortical insufficiency 612964
    Premature ovarian failure 7 612964
    46, XX sex reversal 4 617480
    46, XX sex reversal 4 617480
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process phosphorylation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 20)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000536 (1)
  • InterPro:IPR001628 (1)
  • InterPro:IPR001723 (1)
  • InterPro:IPR013088 (1)
  • InterPro:IPR016355 (1)
  • InterPro:IPR035500 (1)
    		•
  • PROSITE:PS00031 (1)
  • PROSITE:PS51030 (1)
  • PROSITE:PS51843 (1)
    		•
  • Pfam:PF00104 (1)
  • Pfam:PF00105 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nr5a1b-001 (1) 2555
    Select Tool
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nr5a1b No data available
    MARKER RELATIONSHIPS
    nr5a1bContained in: [BAC] CH73-57C17 (1) (order this), CH73-385P1 (1) (order this), CH211-167P9 (order this)
    nr5a1bEncodes: [EST] ay212920 (2) (order this)
    [cDNA] MGC:193828 (1) (order this), MGC:193844 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212834 (1) 2554bp
    Select Tool
    Genomic GenBank:AL772368 162620bp
    Select Tool
    Polypeptide UniProtKB:Q800U8 (1) 502aa
    Select Tool
    Sequence Clusters UniGene:30454 (1)
    Sequence Information (all 18)
    OTHER nr5a1b GENE PAGES
  • Alliance (1)
  • Gene:405759 (1)
  • VEGA:OTTDARG00000032604 (1)
  • Ensembl(GRCz11):ENSDARG00000023362 (1)
    • ORTHOLOGY for nr5a1b (Chr: 21)
    CITATIONS (35)