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ZIRC
ZFIN ID: ZDB-GENE-040625-174
Gene Name: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
Gene Symbol: idh3b    Nomenclature History

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Previous Name: zgc:86647

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have isocitrate dehydrogenase (NAD+) activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to localize to the mitochondrion. Human ortholog(s) of this gene implicated in retinitis pigmentosa 46. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; optic tectum; and pronephric duct. Orthologous to human IDH3B (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta).
Genome Resources: Alliance (1),  Gene:415247 (1),  Ensembl(GRCz11):ENSDARG00000044753 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (5 images) from Thisse et al., 2004 [IMAGE:6905633]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa43610 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH idh3b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 46 Alliance Retinitis pigmentosa 46 612572
    DISEASE ASSOCIATED WITH idh3b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process oxidation-reduction process (more)
    Cellular Component mitochondrion (more)
    Molecular Function isocitrate dehydrogenase (NAD+) activity (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA idh3b-201 (1)    Ensembl 1529
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM idh3b No data available
    MARKER RELATIONSHIPS
    idh3b Contained in: [BAC] DKEYP-87D8, DKEYP-111B3
    idh3b Encodes: [EST] IMAGE:6905633 (1) (order this)
    [cDNA] MGC:86647 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002157 (1) 1496 bp
    Genomic GenBank:BX530059 179045 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QPC9 (1) 386 aa
    Sequence Clusters UniGene:119750 (1)
    Sequence Information (all 16)
    ORTHOLOGY for idh3b ( Chr: 21 )
    CITATIONS (23)