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ZIRC
ZFIN ID: ZDB-GENE-040618-2
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Gene Name: proteasome 20S subunit beta 1
Gene Symbol: psmb1    Nomenclature History

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Previous Names: proteasome beta-subunit C5 (1), wu:fc51f06, zgc:103665

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have endopeptidase activity. Predicted to be involved in proteasomal ubiquitin-independent protein catabolic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to localize to the cytoplasm; nucleus; and proteasome core complex. Orthologous to human PSMB1 (proteasome 20S subunit beta 1).
Genome Resources: Alliance (1),  Gene:445413 (1),  Ensembl(GRCz11):ENSDARG00000009640 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2939Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la018367Tg Transgenic Insertion Unknown Unknown DNA
    sa35392 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH psmb1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH psmb1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process proteolysis (more)
    Cellular Component cytoplasm (more)
    Molecular Function endopeptidase activity (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001353 (1)
  • InterPro:IPR016050 (1)
  • InterPro:IPR023333 (1)
  • InterPro:IPR029055 (1)
  • InterPro:IPR035202 (1)
  • PROSITE:PS00854 (1)
  • PROSITE:PS51476 (1)
  • Pfam:PF00227 (1)
  • EC:3.4.25.1 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA psmb1-201 (1)    Ensembl 942
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM psmb1 No data available
    MARKER RELATIONSHIPS
    psmb1 Contained in: [BAC] CH211-274C22 (1) (order this)
    psmb1 Encodes: [EST] fc51f06 (1)
    [cDNA] MGC:103665 (1) (order this), MGC:192252 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003889 (1) 888 bp
    Select Tool
    Genomic GenBank:BX323887 (1) 134841 bp
    Select Tool
    Polypeptide UniProtKB:Q6DRF3 (1) 237 aa
    Select Tool
    Sequence Clusters UniGene:76303 (1)
    Sequence Information (all 17)
    ORTHOLOGY for psmb1 ( Chr: 13 )
    CITATIONS (37)