ZFIN ID: ZDB-GENE-040426-978
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.
Gene Name: small nuclear ribonucleoprotein 40 (U5)
Gene Symbol: snrnp40
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: wdr57, zgc:56312 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the viral nucleocapsid; orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56312]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa14008 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa16628 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23589 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa43339 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH snrnp40 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH snrnp40 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process RNA splicing (more)
    Cellular Component viral nucleocapsid (more)
    Molecular Function RNA binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR036322 (1)
    		•
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
    		•
  • Pfam:PF00400 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snrnp40-201 (1) 1431
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snrnp40 No data available
    MARKER RELATIONSHIPS
    snrnp40Contained in: [BAC] CH211-285E16 (1) (order this)
    snrnp40Encodes: [cDNA] MGC:56312 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200322 (1) 1438bp
    Select Tool
    Genomic GenBank:CU207343 (1) 166155bp
    Select Tool
    Polypeptide UniProtKB:Q7ZTY9 (1) 347aa
    Select Tool
    Sequence Clusters UniGene:133508 (1)
    Sequence Information (all 9)
    OTHER snrnp40 GENE PAGES
  • Alliance (1)
  • Gene:393292 (1)
  • VEGA:OTTDARG00000026690 (1)
  • Ensembl(GRCz11):ENSDARG00000023160 (2)
    • ORTHOLOGY for snrnp40 (Chr: 19)
    CITATIONS (18)