ZFIN ID: ZDB-GENE-040426-978
Gene Name: small nuclear ribonucleoprotein 40 (U5)
Gene Symbol: snrnp40
Sequence Ontology ID : SO:0000704

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Previous Names: wdr57, zgc:56312 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the viral nucleocapsid; orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56312]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH snrnp40 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH snrnp40 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process RNA splicing (more)
Cellular Component viral nucleocapsid (more)
Molecular Function RNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR036322 (1)
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snrnp40-201 (1) 1431
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snrnp40 No data available
    MARKER RELATIONSHIPS
    snrnp40Contained in: [BAC] CH211-285E16 (1) (order this)
    snrnp40Encodes: [cDNA] MGC:56312 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200322 (1) 1438bp
    Genomic GenBank:CU207343 (1) 166155bp
    Select Tool
    Polypeptide UniProtKB:Q7ZTY9 (1) 347aa
    Sequence Clusters UniGene:133508 (1)
    Sequence Information (all 9)
    OTHER snrnp40 GENE PAGES
  • Alliance (1)
  • Gene:393292 (1)
  • VEGA:OTTDARG00000026690 (1)
  • Ensembl(GRCz11):ENSDARG00000023160 (2)
  • ORTHOLOGY for snrnp40 (Chr: 19)
    CITATIONS (18)