Gene
snrnp40
- ID
- ZDB-GENE-040426-978
- Name
- small nuclear ribonucleoprotein 40 (U5)
- Symbol
- snrnp40 Nomenclature History
- Previous Names
-
- wdr57
- zgc:56312 (1)
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Description
- Predicted to be involved in RNA splicing, via transesterification reactions. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:56312 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Conserved_site | IPR019775 | WD40 repeat, conserved site |
Family | IPR052234 | U5 snRNP Complex Component |
Homologous_superfamily | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
Homologous_superfamily | IPR036322 | WD40-repeat-containing domain superfamily |
Repeat | IPR001680 | WD40 repeat |
Repeat | IPR020472 | G-protein beta WD-40 repeat |
Domain Details Per Protein
Protein | Additional Resources | Length | G-protein beta WD-40 repeat | U5 snRNP Complex Component | WD40 repeat | WD40 repeat, conserved site | WD40-repeat-containing domain superfamily | WD40/YVTN repeat-like-containing domain superfamily |
---|---|---|---|---|---|---|---|---|
UniProtKB:Q7ZTY9 | InterPro | 347 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
snrnp40-201
(1)
|
Ensembl | 1,431 nt |
Interactions and Pathways
No data available
Plasmids
No data available