ZFIN ID: ZDB-GENE-040426-935
Gene Name: RAD9 checkpoint clamp component A
Gene Symbol: rad9a    Nomenclature History

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Previous Names: zgc:56197 (1), zgc:85638

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have 3'-5' exonuclease activity. Predicted to be involved in DNA integrity checkpoint; DNA repair; and cellular response to ionizing radiation. Predicted to localize to checkpoint clamp complex. Orthologous to human RAD9A (RAD9 checkpoint clamp component A).
Genome Resources: Alliance (1),  Gene:393176 (1),  Ensembl(GRCz11):ENSDARG00000056984 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56197]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13610 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15787 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rad9a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rad9a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process DNA damage checkpoint (more)
    Cellular Component checkpoint clamp complex (more)
    Molecular Function 3'-5' exonuclease activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rad9a-201 (1)    Ensembl 1702
    ncRNA rad9a-002 (1)    Ensembl 805
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rad9a No data available
    MARKER RELATIONSHIPS
    rad9a Contained in: [BAC] CH211-10K1 (1)
    rad9a Encodes: [cDNA] MGC:56197 (1), MGC:85638 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200207 (1) 1701 nt
    Genomic GenBank:BX324205 (1) 168546 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q344 (1) 381 aa
    Sequence Information (all 14)
    ORTHOLOGY for rad9a ( Chr: 14 )
    CITATIONS (23)