ZFIN ID: ZDB-GENE-040426-897
Gene Name: splicing factor 3a, subunit 2
Gene Symbol: sf3a2    Nomenclature History

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Previous Names: zgc:56097, zgc:77448

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to localize to the U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A2 (splicing factor 3a subunit 2).
Genome Resources: Alliance (1),  Gene:394018 (1),  Ensembl(GRCz11):ENSDARG00000021107 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56097]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sf3a2 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sf3a2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process spliceosomal complex assembly (more)
Cellular Component nucleus (more)
Molecular Function metal ion binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR000690 Matrin/U1-C, C2H2-type zinc finger
Domain IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
Domain IPR031781 SF3A2 domain
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA sf3a2-201 (1)    Ensembl 1056
ncRNA sf3a2-002 (1)    Ensembl 701
sf3a2-003 (1)    Ensembl 866
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM sf3a2
Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
Tg1(sf3a2:txnipa-mCherry) sf3a2 mCherrytxnipa Danio rerio 4 2
Tg2(sf3a2:txnipa-mCherry) sf3a2 mCherrytxnipa Danio rerio 4 2
MARKER RELATIONSHIPS
sf3a2 Contained in: [BAC] DKEYP-68B7 (1)
sf3a2 Encodes: [cDNA] MGC:56097 (1), MGC:77448 (1), MGC:192634 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_201043 (1) 1086 nt
Genomic GenBank:BX324113 (1) 188968 nt
Select Tool
Polypeptide UniProtKB:Q7ZVD4 (1) 278 aa
Sequence Information (all 17)
ORTHOLOGY for sf3a2 ( Chr: 2 )
CITATIONS (20)