ZFIN ID: ZDB-GENE-040426-806
Gene Name: SAMM50 sorting and assembly machinery component
Gene Symbol: samm50
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:55803

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Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55803]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11533 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24653 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH samm50 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH samm50 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process liver development (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000184 (1)
  • InterPro:IPR034746 (1)
  • InterPro:IPR039910 (1)
  • PROSITE:PS51779 (1)
  • Pfam:PF01103 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA samm50-001 (1) 1833
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM samm50 No data available
    MARKER RELATIONSHIPS
    samm50Contained in: [BAC] DKEY-218L23 (1) (order this)
    samm50Encodes: [cDNA] MGC:55803 (1) (order this), MGC:192683 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200142 (1) 1852bp
    Genomic GenBank:BX897714 (1) 184435bp
    Select Tool
    Polypeptide UniProtKB:B2GSP6 (1) 469aa
    Sequence Clusters UniGene:80333 (1)
    Sequence Information (all 16)
    OTHER samm50 GENE PAGES
  • Alliance (1)
  • Gene:393111 (1)
  • VEGA:OTTDARG00000022506 (1)
  • Ensembl(GRCz11):ENSDARG00000045814 (2)
  • ORTHOLOGY for samm50 (Chr: 25)
    CITATIONS (24)