ZFIN ID: ZDB-GENE-040426-769
Gene Name: UTP6 small subunit processome component
Gene Symbol: utp6
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:55648 (1)

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have snoRNA binding activity; predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); predicted to localize to the  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55648]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa40668 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH utp6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH utp6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (more)
    Cellular Component Pwp2p-containing subcomplex of 90S preribosome (more)
    Molecular Function snoRNA binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003107 (1)
  • InterPro:IPR011990 (1)
  • InterPro:IPR013949 (1)
  • Pfam:PF08640 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA utp6-004 (1) 433
    utp6-005 (1) 782
    mRNA utp6-201 (1) 732
    utp6-204 (1) 622
    utp6-205 (1) 2014
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM utp6 No data available
    MARKER RELATIONSHIPS
    utp6Contained in: [BAC] DKEY-10P5 (1) (order this)
    utp6Encodes: [cDNA] MGC:55648 (1) (order this), MGC:174851 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001111207 (1) 2062bp
    Genomic GenBank:AL954746 (1) 231840bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IGM5 (1) 594aa
    Sequence Clusters UniGene:77391 (1)
    Sequence Information (all 18)
    OTHER utp6 GENE PAGES
  • Alliance (1)
  • Gene:393107 (1)
  • VEGA:OTTDARG00000011575 (1)
  • ORTHOLOGY for utp6 (Chr: 6)
    CITATIONS (16)