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ZIRC
ZFIN ID: ZDB-GENE-040426-728
Gene Name: activating transcription factor 3
Gene Symbol: atf3    Nomenclature History

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Previous Name: zgc:55526 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have RNA polymerase II proximal promoter sequence-specific DNA binding activity. Involved in response to virus. Predicted to localize to the nucleus. Is expressed in brain; eye; and retina. Orthologous to human ATF3 (activating transcription factor 3).
Genome Resources: Alliance (1),  Gene:393939 (1),  Ensembl(GRCz11):ENSDARG00000007823 (2)
GENE EXPRESSION
All Expression Data: 15 figures from 10 publications
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028265Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la028266Tg Transgenic Insertion Unknown Unknown DNA
    sa43503 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-atf3 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH atf3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atf3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process response to virus (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atf3-201 (1)    Ensembl 2701
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atf3 No data available
    MARKER RELATIONSHIPS
    atf3 Contained in: [BAC] CH211-147D7 (1) (order this)
    atf3 Encodes: [cDNA] MGC:55526 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200964 (1) 2677 bp
    Genomic GenBank:BX664628 (1) 101135 bp
    Select Tool
    Polypeptide UniProtKB:Q7ZVX7 (1) 202 aa
    Sequence Clusters UniGene:77523 (1)
    Sequence Information (all 12)
    ORTHOLOGY for atf3 ( Chr: 20 )
    CITATIONS (56)