ZFIN ID: ZDB-GENE-040426-2902
Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
Gene Symbol: ddx39ab    Nomenclature History

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Previous Names: ddx39, ddx39b, fc16a02, wu:fc16a02, zgc:55433, zgc:85646

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Exhibits RNA binding activity. Involved in several processes, including histone H3-K4 methylation; lens fiber cell differentiation; and mRNA splicing, via spliceosome. Is expressed in several structures, including eye; heart tube; immature eye; liver; and trunk musculature. Orthologous to human DDX39A (DExD-box helicase 39A).
Genome Resources: Alliance (1),  Gene:406249 (1),  Ensembl(GRCz11):ENSDARG00000015111 (1)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55433]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
nju203Gt Transgenic Insertion Exon 2 Unknown DNA
sa19934 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH ddx39ab HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx39ab VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac muscle cell differentiation (more)
    Molecular Function RNA binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ddx39ab-201 (1)    Ensembl 1587
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ddx39ab No data available
    MARKER RELATIONSHIPS
    ddx39ab Contained in: [BAC] CH73-193D8 (1), CH211-106H11 (1)
    ddx39ab Encodes: [EST] fc16a02 (1)
    [cDNA] MGC:55433 (1), MGC:85646 (1), MGC:158181 (1), MGC:192935 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212977 (1) 1603 nt
    Genomic GenBank:BX248081 174325 nt
    Select Tool
    Polypeptide UniProtKB:F6NVB9 (1) 428 aa
    Sequence Information (all 22)
    ORTHOLOGY for ddx39ab ( Chr: 3 )
    CITATIONS (22)