ZFIN ID: ZDB-GENE-040426-2857
Gene Name: sorting nexin 5
Gene Symbol: snx5
Sequence Ontology ID : SO:0000704

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Previous Names: id:ibd5091, wu:fa66c10, wu:fi28h04, zgc:55769 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have phosphatidylinositol binding activity; involved in several processes, including Notch signaling pathway, animal organ development, and blood vessel morphogenesis; localizes to the  ...
GENE EXPRESSION
All Expression Data: 11 figures from 4 publications
Directly Submitted Expression Data: 4 figures (3 images) from Thisse et al., 2004 [MGC:55769]
  3 figures (3 images) from Kudoh et al., 2001 [ibd5091]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Pharyngula:Prim-25 (36.0h-42.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa38956 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45494 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 6 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH snx5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH snx5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process blood vessel morphogenesis (more)
    Cellular Component early endosome (more)
    Molecular Function protein binding (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001683 (1)
  • InterPro:IPR014637 (1)
  • InterPro:IPR015404 (1)
  • InterPro:IPR027267 (1)
  • InterPro:IPR028654 (1)
  • InterPro:IPR036871 (1)
  • InterPro:IPR039358 (1)
  • PROSITE:PS50195 (1)
  • Pfam:PF00787 (1)
  • Pfam:PF09325 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snx5-001 (1) 2582
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM snx5 No data available
    MARKER RELATIONSHIPS
    snx5Contained in: [BAC] DKEY-76K16 (1) (order this)
    snx5Encodes: [EST] fa66c10 (1), fi28h04 (1), ibd5091 (1) (order this)
    [cDNA] MGC:55769 (1) (order this), MGC:86653 (1) (order this), MGC:192919 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_214769 (1) 2539bp
    Genomic GenBank:BX005372 (1) 199736bp
    Select Tool
    Polypeptide UniProtKB:Q0QGJ3 (1) 399aa
    Sequence Clusters UniGene:6495 (1)
    Sequence Information (all 23)
    OTHER snx5 GENE PAGES
  • Alliance (1)
  • Gene:406797 (1)
  • VEGA:OTTDARG00000020858 (1)
  • Ensembl(GRCz11):ENSDARG00000020442 (2)
  • ORTHOLOGY for snx5 (Chr: 13)
    CITATIONS (30)