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ZIRC
ZFIN ID: ZDB-GENE-040426-2744
Gene Name: SMAD specific E3 ubiquitin protein ligase 1
Gene Symbol: smurf1
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fb30b12, wwp1, zgc:66401

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and  ...
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2004 [MGC:66401]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015217Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7547 Point Mutation Unknown Missense ENU
    sa20098 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20099 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20100 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smurf1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH smurf1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ubiquitin-dependent protein catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function transferase activity (more)
    GO Terms (all 11)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smurf1-201 (1) 4409
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smurf1 No data available
    MARKER RELATIONSHIPS
    smurf1Contained in: [BAC] DKEY-33C3 (1) (order this)
    smurf1Encodes: [EST] fb30b12 (1)
    [cDNA] MGC:66401 (1) (order this)
    smurf1Has Artifact: [cDNA] MGC:56445 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001001943 (1) 4418bp
    Genomic GenBank:BX649559 (1) 143056bp
    Select Tool
    Polypeptide UniProtKB:F1QEG9 (1) 731aa
    Sequence Clusters UniGene:76814 (1)
    Sequence Information (all 17)
    ORTHOLOGY for smurf1 (Chr: 3)
    CITATIONS (29)