ZFIN ID: ZDB-GENE-040426-2292
Gene Name: nucleoporin 42
Gene Symbol: nup42    Nomenclature History

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Previous Names: nupl2, zgc:77724

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have nuclear export signal receptor activity. Predicted to be involved in mRNA transport and protein transport. Predicted to colocalize with nuclear envelope. Orthologous to human NUP42 (nucleoporin 42).
Genome Resources: Alliance (1),  Gene:406491 (1),  Ensembl(GRCz11):ENSDARG00000029043 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:77724]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa36745 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH nup42 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nup42 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA transport (more)
    Cellular Component membrane (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nupl2-201 (1)    Ensembl 1399
    ncRNA nupl2-002 (1)    Ensembl 881
    nupl2-003 (1)    Ensembl 612
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nup42 No data available
    MARKER RELATIONSHIPS
    nup42 Contained in: [Fosmid] CH1073-199L10 (1), CH1073-440P11 (1)
    nup42 Encodes: [cDNA] MGC:77724 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_213210 (1) 1363 nt
    Genomic GenBank:CU638710 (1) 39223 nt
    Select Tool
    Polypeptide UniProtKB:Q6P0U9 (1) 414 aa
    Sequence Information (all 11)
    ORTHOLOGY for nup42 ( Chr: 19 )
    CITATIONS (20)