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ZIRC
ZFIN ID: ZDB-GENE-040426-2232
Gene Name: microtubule-associated protein 1 light chain 3 alpha
Gene Symbol: map1lc3a
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:77094

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have microtubule binding activity; predicted to be involved in autophagosome assembly, autophagy of mitochondrion, and cellular response to nitrogen starvation; predicted to localize to  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (9 images) from Thisse et al., 2004 [MGC:77094]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH map1lc3a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH map1lc3a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process autophagy (more)
Cellular Component autophagosome (more)
Molecular Function microtubule binding (more)
GO Terms (all 12)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004241 (1)
  • InterPro:IPR029071 (1)
  • Pfam:PF02991 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA map1lc3a-201 (1) 1511
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM map1lc3a No data available
    MARKER RELATIONSHIPS
    map1lc3aContained in: [BAC] DKEY-57N24 (1) (order this)
    map1lc3aEncodes: [cDNA] MGC:77094 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_214739 (1) 1509bp
    Genomic GenBank:CU467888 (1) 168058bp
    Select Tool
    Polypeptide UniProtKB:Q6NX90 (1) 121aa
    Sequence Clusters UniGene:3780 (1)
    Sequence Information (all 12)
    ORTHOLOGY for map1lc3a (Chr: 11)
    CITATIONS (20)