ZFIN ID: ZDB-GENE-040426-2154
Gene Name: vesicle (multivesicular body) trafficking 1
Gene Symbol: vta1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: c6orf55 (1), wu:fb08c11, zgc:64104 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to localize to multivesicular body. Orthologous to human VTA1 (vesicle trafficking 1).
Genome Resources: Alliance (1),  Gene:406414 (1),  Ensembl(GRCz11):ENSDARG00000013732 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:64104]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37116 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vta1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vta1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process late endosome to vacuole transport via multivesicular body sorting pathway (more)
    Cellular Component multivesicular body (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA vta1-201 (1)    Ensembl 1550
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM vta1 No data available
    MARKER RELATIONSHIPS
    vta1 Contained in: [BAC] CH211-202P1 (1), DKEY-283F18 (1) (order this)
    vta1 Encodes: [EST] fb08c11 (1)
    [cDNA] MGC:64104 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_213140 (1) 1541 nt
    Genomic GenBank:BX004780 (1) 188317 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8RJY3 (1) 303 aa
    Sequence Information (all 15)
    ORTHOLOGY for vta1 ( Chr: 20 )
    CITATIONS (21)