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General Information
ZIRC
ZFIN ID: ZDB-GENE-040426-2154
Gene Name: vesicle (multivesicular body) trafficking 1
Gene Symbol: vta1
Sequence Ontology ID : SO:0000704

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Previous Names: c6orf55 (1), wu:fb08c11, zgc:64104 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human VTA1 (vesicle trafficking 1).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:64104]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37116 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vta1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vta1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR023175 (1)
  • InterPro:IPR039431 (1)
  • InterPro:IPR041212 (1)
  • Pfam:PF04652 (1)
  • Pfam:PF18097 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA vta1-201 (1) 1550
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vta1 No data available
    MARKER RELATIONSHIPS
    vta1Contained in: [BAC] CH211-202P1 (1) (order this), DKEY-283F18 (1) (order this)
    vta1Encodes: [EST] fb08c11 (1)
    [cDNA] MGC:64104 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213140 (1) 1541bp
    Genomic GenBank:BX004780 (1) 188317bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8RJY3 (1) 303aa
    Sequence Clusters UniGene:2866 (1)
    Sequence Information (all 16)
    ORTHOLOGY for vta1 (Chr: 20)
    CITATIONS (18)