ZFIN ID: ZDB-GENE-040426-1997
Gene Name: cleavage stimulation factor, 3' pre-RNA, subunit 3
Gene Symbol: cstf3
Sequence Ontology ID : SO:0000704

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Previous Names: cleavage stimulation factor, 3 pre-RNA, subunit 3, wu:fa99c02, wu:fb18b09, zgc:56028

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have mRNA binding activity; predicted to be involved in RNA 3'-end processing; predicted to localize to the nucleus; orthologous to human CSTF3 (cleavage stimulation factor subunit 3).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7137479]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2908Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la020481Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16073 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16190 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32217 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • t25877 Point Mutation Unknown Frameshift ENU
    Targeting reagents:
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH cstf3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cstf3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA processing (more)
    Cellular Component nucleus (more)
    Molecular Function mRNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003107 (1)
  • InterPro:IPR008847 (1)
  • InterPro:IPR011990 (1)
  • Pfam:PF05843 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cstf3-001 (1) 2690
    ncRNA cstf3-002 (1) 756
    cstf3-003 (1) 699
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cstf3 No data available
    MARKER RELATIONSHIPS
    cstf3Contained in: [BAC] DKEY-34O23 (1) (order this)
    cstf3Contains: [SNP] rs3728934 (1)
    cstf3Encodes: [EST] fa99c02 (1), fb18b09 (1), IMAGE:7137479 (1) (order this)
    [cDNA] MGC:56028 (1) (order this), MGC:192738 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213053 (1) 2632bp
    Genomic GenBank:CU896647 (1) 118597bp
    Select Tool
    Polypeptide UniProtKB:F1QIB2 (1) 716aa
    Sequence Clusters UniGene:104620 (1)
    Sequence Information (all 25)
    OTHER cstf3 GENE PAGES
  • Alliance (1)
  • Gene:406326 (1)
  • VEGA:OTTDARG00000034663 (1)
  • Ensembl(GRCz11):ENSDARG00000018904 (2)
  • ORTHOLOGY for cstf3 (Chr: 18)
    CITATIONS (32)