ZFIN is now using GRCz12tu for Genomic Data
Gene
sema6ca
- ID
- ZDB-GENE-040426-1933
- Name
- sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ca
- Symbol
- sema6ca Nomenclature History
- Previous Names
-
- sema6d
- wu:fi06a12
- wu:fi76a10
- zgc:56170
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axonogenesis; branching involved in blood vessel morphogenesis; and optic cup morphogenesis involved in camera-type eye development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in blood vessel; central nervous system; neural rod; optic vesicle; and retina. Orthologous to several human genes including SEMA6C (semaphorin 6C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 5 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:56170 (2 images)
- IMAGE:7136041 (1 image)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Sema domain | Sema domain superfamily | Semaphorin | WD40/YVTN repeat-like-containing domain superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:B8JMB1 | InterPro | 898 | ||||
| UniProtKB:A0AB32T827 | InterPro | 934 | ||||
| UniProtKB:A0AB32TD15 | InterPro | 880 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sema6d-201
(1)
|
Ensembl | 3,378 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers