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ZIRC
ZFIN ID: ZDB-GENE-040426-1928
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Gene Name: H3 histone, family 3A
Gene Symbol: h3f3a
Sequence Ontology ID : SO:0001217

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Previous Names: fb58e10, lamprey (1), lpy (1), wu:fb58e10, zgc:56193, zgc:86731

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(Including Attributions)
Location: Ambiguous Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Localizes to the nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
GENE EXPRESSION
All Expression Data: Fig. 3 from Cox et al., 2012
Wild-type Stages, Structures: Blastula:Sphere (4.0h-4.33h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
db1092 Point Mutation Unknown Missense
la024249Tg Transgenic Insertion Unknown Unknown DNA
sa20117 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa20118 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from Cox et al., 2012
    Observed in:
    DISEASE ASSOCIATED WITH h3f3a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH h3f3a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleosome (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA h3f3a-002 (1) 785
    Select Tool
    mRNA h3f3b.1-202 (1) 723
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM h3f3a No data available
    MARKER RELATIONSHIPS
    h3f3a Contained in: [BAC] CH211-66H3 (1) (order this), DKEY-24P6 (1) (order this)
    h3f3a Contains: [SNP] rs3727731 (1)
    h3f3a Encodes: [EST] fb58e10
    [cDNA] MGC:56193 (1) (order this), MGC:86731 (1) (order this), MGC:165454 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212996 (1) 749 bp
    Select Tool
    Genomic GenBank:BX323991 (1) 174390 bp
    Select Tool
    Polypeptide RefSeq:NP_998161 (1) 136 aa
    Select Tool
    Sequence Clusters UniGene:75603 (1)
    Sequence Information (all 22)
    OTHER h3f3a GENE PAGES
  • Alliance (1)
  • Gene:406269 (1)
  • VEGA:OTTDARG00000020292 (1)
    • ORTHOLOGY for h3f3a ( Ambiguous )
    CITATIONS (23)