| ZFIN ID: ZDB-GENE-040426-1928 |
| Gene Name: | H3 histone, family 3A | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene Symbol: | h3f3a Nomenclature History |
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Attributions
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| Previous Names: | fb58e10, lamprey (1), lpy (1), wu:fb58e10, zgc:56193, zgc:86731 | |||||||||||||
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| Gene Type: | protein_coding_gene | |||||||||||||
| Location: | Ambiguous Mapping Details/Browsers | |||||||||||||
| Description: | Localizes to nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A). | |||||||||||||
| Genome Resources: | Alliance (1), Gene:406269 (1), | |||||||||||||
| All Expression Data: | Fig. 3 from Cox et al., 2012 |
| Wild-type Stages, Structures: | Blastula:Sphere (4.0h-4.33h) to Pharyngula:Prim-5 (24.0h-30.0h) |
| High Throughput Expression: | GEO (1) |
MUTATIONS AND SEQUENCE TARGETING REAGENTS
| Allele | Type | Localization | Consequence | Mutagen | Suppliers |
|---|---|---|---|---|---|
| db1092 | Point Mutation | Unknown | Missense | ||
| la024249Tg | Transgenic Insertion | Unknown | Unknown | DNA | |
| sa20117 | Point Mutation | Unknown | Premature Stop | ENU |
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| sa20118 | Point Mutation | Unknown | Premature Stop | ENU |
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PHENOTYPE
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
| Data: | 2 figures from Cox et al., 2012 |
| Observed in: |
| Type | Name | Length (nt) | Analysis | |
|---|---|---|---|---|
| mRNA |
h3f3b.1-202
(1)
|
723 |
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|
|
| ncRNA |
h3f3a-002
(1)
|
785 |
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|
| Browsers: NCBI |
INTERACTIONS AND PATHWAYS
ANTIBODIES
No data available
PLASMIDS
No data available
CONSTRUCTS WITH SEQUENCES FROM h3f3a
| Construct | Regulatory Regions | Coding Sequences | Species | Tg Lines | Publications |
|---|---|---|---|---|---|
| tg(hsp70l:h3f3a,cryaa:cerulean) | cryaa, hsp70l | Cerulean, h3f3a | Danio rerio | 1 | 1 |
| tg(hsp70l:loxp-mkate2-loxp-h3f3ak27m,cryaa:cerulean) | cryaa, hsp70l | Cerulean, h3f3a, LOXP, mKate2 | Danio rerio | 1 | 1 |
MARKER RELATIONSHIPS
| h3f3a Contained in: | [BAC] CH211-66H3 (1), DKEY-24P6 (1) (order this) |
| h3f3a Contains: | [SNP] rs3727731 (1) |
| h3f3a Encodes: |
[EST]
fb58e10
[cDNA] MGC:56193 (1), MGC:86731 (1), MGC:165454 (1) |
SEQUENCE INFORMATION
| Type | Accession # | Length (nt/aa) | Analysis |
|---|---|---|---|
| RNA | RefSeq:NM_212996 (1) | 749 nt |
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|
| Genomic | GenBank:BX323991 (1) | 174390 nt | |
| Polypeptide | RefSeq:NP_998161 (1) | 136 aa |
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ORTHOLOGY for h3f3a (
Ambiguous
)
CITATIONS (24)