ZFIN ID: ZDB-GENE-040426-1928
Gene Name: H3 histone, family 3A
Gene Symbol: h3f3a    Nomenclature History

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Previous Names: fb58e10, lamprey (1), lpy (1), wu:fb58e10, zgc:56193, zgc:86731

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Ambiguous Mapping Details/Browsers
Description: Localizes to nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
Genome Resources: Alliance (1),  Gene:406269 (1), 
GENE EXPRESSION
All Expression Data: Fig. 3 from Cox et al., 2012
Wild-type Stages, Structures: Blastula:Sphere (4.0h-4.33h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
High Throughput Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
db1092 Point Mutation Unknown Missense
la024249Tg Transgenic Insertion Unknown Unknown DNA
sa20117 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20118 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-h3f3a N/A 1
    DISEASE ASSOCIATED WITH h3f3a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH h3f3a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleosome (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA h3f3b.1-202 (1)    Ensembl 723
    ncRNA h3f3a-002 (1)    Ensembl 785
    Browsers: NCBI
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM h3f3a
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    tg(hsp70l:h3f3a,cryaa:cerulean) cryaahsp70l Ceruleanh3f3a Danio rerio 1 1
    tg(hsp70l:loxp-mkate2-loxp-h3f3ak27m,cryaa:cerulean) cryaahsp70l Ceruleanh3f3aLOXPmKate2 Danio rerio 1 1
    MARKER RELATIONSHIPS
    h3f3a Contained in: [BAC] CH211-66H3 (1), DKEY-24P6 (1) (order this)
    h3f3a Contains: [SNP] rs3727731 (1)
    h3f3a Encodes: [EST] fb58e10
    [cDNA] MGC:56193 (1), MGC:86731 (1), MGC:165454 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212996 (1) 749 nt
    Genomic GenBank:BX323991 (1) 174390 nt
    Select Tool
    Polypeptide RefSeq:NP_998161 (1) 136 aa
    Sequence Information (all 21)
    ORTHOLOGY for h3f3a ( Ambiguous )
    CITATIONS (24)