ZFIN ID: ZDB-GENE-040426-1888
Gene Name: transmembrane protein 38A
Gene Symbol: tmem38a    Nomenclature History

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Previous Name: zgc:77831 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to localize to integral component of membrane; nuclear membrane; and sarcoplasmic reticulum membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).
Genome Resources: Alliance (1),  Gene:393874 (1),  Ensembl(GRCz11):ENSDARG00000024047 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (6 images) from Thisse et al., 2004 [IMAGE:6907803]
  11 figures (25 images) from Rauch et al., 2003 [cegs2890]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35020 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tmem38a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tmem38a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ion transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function cation channel activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA tmem38a-201 (1)    Ensembl 1395
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tmem38a No data available
    MARKER RELATIONSHIPS
    tmem38a Contained in: [BAC] CH73-238C9 (1)
    [Fosmid] ZFOS-1451H6 (1)
    tmem38a Encodes: [EST] cegs2890 (1) (order this), IMAGE:6907803 (1)
    [cDNA] MGC:77831 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200900 (1) 1422 nt
    Genomic GenBank:FP016232 (1) 121550 nt
    Select Tool
    Polypeptide UniProtKB:Q6P2T0 (1) 295 aa
    Sequence Information (all 13)
    ORTHOLOGY for tmem38a ( Chr: 11 )
    CITATIONS (25)